Detailed information for RetinalMD_04501
Basic information
| location | chr1:215972408-215972408 (hg19) | |
|---|---|---|
| gene symbol | USH2A (Reference) | |
| band | 1q41 | |
| reference | A | |
| observed | G | |
| disease | Usher syndrome | |
| PubMed ID | 25404053 | |
| ethnicity | NotFound | |
| description | USH2A:NM_206933:exon50:c.T9799C:p.C3267R;USH2A:NM_206933:exon50:c.T9799C:p.C3267R (Reference) |
MGI
| MGI ID | 1341292 |
|---|---|
| MGI phenotype | vision/eye phenotype |
OMIM
| OMIM ID | 608400 |
|---|---|
| OMIM phenotype | Usher syndrome, type 2A |
Genome feature annotation
| segmental duplication | conserved TFBS | Encode TFBS | DNase I hypersensitivity sites |
|---|---|---|---|
| Score=758;Name=V$TCF11MAFG_01 |
wgEncodeBroadHmm feature annotation
| Gm12878 | H1hesc | Hepg2 | Hmec | Hsmm | Huvec | K562 | Nhek | Nhlf |
|---|---|---|---|---|---|---|---|---|
| Name=13_Heterochrom/lo |
ESP and CG annotation
| ESP5400 | ESP5400_aa | ESP5400_ea | ESP6500 | ESP6500_aa | ESP6500_ea | ESP6500si | ESP6500si_aa | ESP6500si_ea | CG46 | CG69 |
|---|---|---|---|---|---|---|---|---|---|---|
| - | - |
dbSNP annotation
| snp137 | snp135 | snp132 | snp131 | snp130 | snp129 | snp137_NonFlagged | snp135_NonFlagged | snp132_NonFlagged | snp131_NonFlagged | snp130_NonFlagged |
|---|---|---|---|---|---|---|---|---|---|---|
1000 genomes annotation
| 2012apr | 2012apr_eur | 2012apr_amr | 2012apr_asn | 2012apr_afr | 2012feb | 2011may | 2010nov |
|---|---|---|---|---|---|---|---|
Functional prediction
| SIFT | SIFT predict | PolyPhen2 | PolyPhen2 predict | phyloP | phyloP predict | LRT | LRT predict | MT | MT predict | GERP++ | GERP++ predict | GERP++elem | GERP++gt2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | D | 1 | D | 0.998 | D | 0 | D | 1 | D | - | 5.81 |
Conserved and constrained region annotation
| multiz46way | |
|---|---|
| phastcons46way | Score=436;Name=lod=79 |
| phylop46way |
RNA function annotation
| human_predictions_S_C_aug2010 | human_predictions_S_0_aug2010 | human_predictions_0_C_aug2010 | human_predictions_0_0_aug2010 | circRNAs sebastian memczak | conserved functional RNA |
|---|---|---|---|---|---|